STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162207Protogenin homolog b (Gallus gallus). (1166 aa)    
Predicted Functional Partners:
capsl
Calcyphosine-like b.
    
 
 0.724
atp8b2
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
     
 0.706
rsl24d1
Ribosomal L24 domain containing 1.
 
    
 0.694
hmg20b
High mobility group 20B.
    
 0.629
cfap53
Uncharacterized protein.
    
 0.627
fam214a
Family with sequence similarity 214 member A.
      
 0.611
btbd2
BTB (POZ) domain containing 2b.
      
 0.611
MEX3D
Mex-3 RNA binding family member D.
      
 0.611
lmbrd2
LMBR1 domain containing 2b.
      
 0.611
LOC101157368
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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