STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
elavl3ELAV-like protein; Belongs to the RRM elav family. (358 aa)    
Predicted Functional Partners:
LOC101173548
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
   
  
 0.821
kank2
KN motif and ankyrin repeat domains 2.
   
  
 0.785
neurog1
Neurogenin 1.
   
  
 0.781
LOC101159508
Dedicator of cytokinesis 6; Belongs to the DOCK family.
      
 0.778
mgrn1
Mahogunin, ring finger 1b.
      
 0.777
igfals
Insulin-like growth factor binding protein, acid labile subunit.
   
  
 0.770
ten1
TEN1 subunit of CST complex.
      
 0.760
LOC101163732
Microphthalmia-associated transcription factor 2 isoform m.
      
 0.747
ift88
Intraflagellar transport 88 homolog.
      
 0.737
gap43
Growth associated protein 43.
   
 
 0.726
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.