elavl3 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

elavl3

ELAV-like protein; Belongs to the RRM elav family. (358 aa)

Predicted Functional Partners:

LOC101173548

0.603

tra2b

0.601

gap43

0.586

LOC101160403

0.579

LOC101156012

0.578

ten1

0.573

LOC101163271

0.570

mgrn1

0.568

LOC101161576

0.566

neurog1

0.562

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156012	LOC101163271	ENSORLP00000015205	ENSORLP00000014121	RRM domain-containing protein.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.607
LOC101156012	elavl3	ENSORLP00000015205	ENSORLP00000006780	RRM domain-containing protein.	ELAV-like protein; Belongs to the RRM elav family.	0.578
LOC101156012	tra2b	ENSORLP00000015205	ENSORLP00000045431	RRM domain-containing protein.	RRM domain-containing protein.	0.486
LOC101160403	LOC101163271	ENSORLP00000036986	ENSORLP00000014121	RNA binding motif protein 38.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.741
LOC101160403	elavl3	ENSORLP00000036986	ENSORLP00000006780	RNA binding motif protein 38.	ELAV-like protein; Belongs to the RRM elav family.	0.579
LOC101160403	tra2b	ENSORLP00000036986	ENSORLP00000045431	RNA binding motif protein 38.	RRM domain-containing protein.	0.480
LOC101161576	LOC101163271	ENSORLP00000009929	ENSORLP00000014121	RNA binding motif protein 24b.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.623
LOC101161576	elavl3	ENSORLP00000009929	ENSORLP00000006780	RNA binding motif protein 24b.	ELAV-like protein; Belongs to the RRM elav family.	0.566
LOC101161576	tra2b	ENSORLP00000009929	ENSORLP00000045431	RNA binding motif protein 24b.	RRM domain-containing protein.	0.472
LOC101163271	LOC101156012	ENSORLP00000014121	ENSORLP00000015205	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	RRM domain-containing protein.	0.607
LOC101163271	LOC101160403	ENSORLP00000014121	ENSORLP00000036986	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 38.	0.741
LOC101163271	LOC101161576	ENSORLP00000014121	ENSORLP00000009929	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 24b.	0.623
LOC101163271	elavl3	ENSORLP00000014121	ENSORLP00000006780	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.570
LOC101173548	elavl3	ENSORLP00000037612	ENSORLP00000006780	Glial fibrillary acidic protein; Belongs to the intermediate filament family.	ELAV-like protein; Belongs to the RRM elav family.	0.603
LOC101173548	gap43	ENSORLP00000037612	ENSORLP00000036090	Glial fibrillary acidic protein; Belongs to the intermediate filament family.	Growth associated protein 43.	0.526
elavl3	LOC101156012	ENSORLP00000006780	ENSORLP00000015205	ELAV-like protein; Belongs to the RRM elav family.	RRM domain-containing protein.	0.578
elavl3	LOC101160403	ENSORLP00000006780	ENSORLP00000036986	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 38.	0.579
elavl3	LOC101161576	ENSORLP00000006780	ENSORLP00000009929	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 24b.	0.566
elavl3	LOC101163271	ENSORLP00000006780	ENSORLP00000014121	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.570
elavl3	LOC101173548	ENSORLP00000006780	ENSORLP00000037612	ELAV-like protein; Belongs to the RRM elav family.	Glial fibrillary acidic protein; Belongs to the intermediate filament family.	0.603