Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snx15Sorting nexin 15. (381 aa)    
Predicted Functional Partners:
LOC101170803
Receptor expression-enhancing protein.
    
 
 0.896
LOC101164298
Receptor expression-enhancing protein.
    
 
 0.896
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.836
rint1
RAD50 interactor 1.
   
 0.828
stx18
Syntaxin 18.
    
 0.821
zw10
Zw10 kinetochore protein.
   
 0.818
nbas
Neuroblastoma amplified sequence.
    
 0.815
pxmp2
Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.736
REXO5
RNA exonuclease 5.
      
 0.716
LOC101159203
Coiled-coil domain containing 106b.
      
 0.715
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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