STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163419Spondin 2a, extracellular matrix protein. (334 aa)    
Predicted Functional Partners:
itfg2
Integrin alpha FG-GAP repeat containing 2.
      
 0.608
rab28
Uncharacterized protein.
      
 0.563
gnl2
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
      
 0.539
ENSORLP00000030548
Family with sequence similarity 163 member B, genome duplicate a.
      
 0.535
slc38a10
Solute carrier family 38 member 10.
      
 0.483
neto1
Neuropilin (NRP) and tolloid (TLL)-like 1, like.
      
 0.464
LOC101168898
Neuropilin (NRP) and tolloid (TLL)-like 1.
      
 0.464
fli1
Fli-1 proto-oncogene, ETS transcription factor a.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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