STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eomesEomesodermin homolog b. (594 aa)    
Predicted Functional Partners:
ENSORLP00000035859
Homeobox domain-containing protein.
   
 0.619
sox17
SRY-box containing gene 17.
    
 0.554
gata3
Uncharacterized protein.
    
 0.531
unc13d
Unc-13 homolog D (C. elegans).
      
 0.512
LOC100049520
POU domain protein.
   
 0.507
foxh1
Forkhead box H1.
     
 0.500
LOC100125525
Uncharacterized protein.
      
 0.498
LOC101173047
Epithelial splicing regulatory protein 2.
      
 0.497
trim71
Tripartite motif containing 71, E3 ubiquitin protein ligase.
    
 0.479
gata6
GATA binding protein 6.
    
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.