STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkcshProtein kinase C substrate 80K-H. (530 aa)    
Predicted Functional Partners:
ganab
Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family.
   
 0.996
LOC101164594
Uncharacterized protein.
  
  
 
0.905
gnptab
N-acetylglucosamine-1-phosphate transferase subunits alpha and beta.
    
 
 0.834
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.735
sec63
SEC63 homolog, protein translocation regulator.
   
  
 0.722
LOC101159642
Calmegin.
   
 0.704
canx
Calnexin.
   
 0.704
alg5
ALG5 dolichyl-phosphate beta-glucosyltransferase.
   
  
 0.699
mogs
Mannosyl-oligosaccharide glucosidase.
   
 
 0.678
nagpa
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
     
 0.549
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.