Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tbc1d1TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1. (1389 aa)    
Predicted Functional Partners:
dgke
Diacylglycerol kinase.
      
 0.773
tbc1d16
TBC1 domain family, member 16.
      
0.769
card14
Caspase recruitment domain family, member 14.
      
 0.662
arhgap17
Uncharacterized protein.
      
 0.650
LOC101162540
RAB14, member RAS oncogene family.
    
 0.482
LOC101167092
Uncharacterized protein.
    
 0.482
pttg1
Uncharacterized protein.
      
 0.463
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
      
 0.463
baiap2l2
BAI1-associated protein 2-like 2b.
      
 0.445
ENSORLP00000026150
Chromobox homolog 6a.
      
 0.442
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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