STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d1TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1. (1389 aa)    
Predicted Functional Partners:
dgke
Diacylglycerol kinase.
      
 0.720
card14
Caspase recruitment domain family, member 14.
   
  
 0.703
tbc1d16
TBC1 domain family, member 16.
      
0.614
arhgap17
Uncharacterized protein.
      
 0.614
PCGF3
Polycomb group ring finger 3.
   
  
 0.455
ENSORLP00000026150
Chromobox homolog 6a.
      
 0.452
nek10
NIMA-related kinase 10.
    
 0.451
baiap2l2
BAI1-associated protein 2-like 2b.
      
 0.437
pcgf5
Polycomb group ring finger 5a.
   
  
 0.410
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
      
 0.404
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.