Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
klf3Kruppel like factor 3. (383 aa)    
Predicted Functional Partners:
foxa3
Me-FKH1.
    
 0.734
KCNK4
Potassium two pore domain channel subfamily K member 4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.612
LOC101171732
Adhesion G protein-coupled receptor A1a.
   
 0.514
LOC101165044
Multiple C2 domains, transmembrane 2b.
      
 0.513
otud7a
OTU deubiquitinase 7A.
    
 
 0.507
acbd4
Acyl-CoA binding domain containing 4.
      
 0.499
LOC100049520
POU domain protein.
    
 0.453
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.426
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.419
rps27a
Ribosomal protein S27a.
    
 0.419
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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