STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brms1BRMS1 transcriptional repressor and anoikis regulator. (273 aa)    
Predicted Functional Partners:
H2M348_ORYLA
Tudor-knot domain-containing protein.
   
 0.985
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.985
Arid4a
Tudor domain-containing protein.
   
 0.985
sap30l
Sap30-like.
   
 0.922
LOC101172976
SIN3-HDAC complex associated factor.
    
 0.894
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.867
sin3a
SIN3 transcription regulator family member Aa.
   
 0.858
sin3b
SIN3 transcription regulator family member B.
   
 0.858
LOC101163723
SIN3 transcription regulator family member Ab.
   
 0.858
LOC110017569
SIN3-HDAC complex associated factor, like.
    
 0.800
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.