STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh16Cadherin 16, KSP-cadherin. (775 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.989
LOC101173369
Junction plakoglobin a.
    
 0.970
LOC101171502
Uncharacterized protein.
    
 0.963
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.963
cdh13
Cadherin 13, H-cadherin (heart).
     
0.953
CDH18
Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins.
     
0.948
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.946
LOC101161503
Uncharacterized protein.
   
 0.946
LOC101154816
Cadherin 12, type 2a (N-cadherin 2); Cadherins are calcium-dependent cell adhesion proteins.
     
0.939
CDH6
Cadherin 6; Cadherins are calcium-dependent cell adhesion proteins.
     
0.937
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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