Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155833RAP2A, member of RAS oncogene family b. (183 aa)    
Predicted Functional Partners:
tox
Thymocyte selection-associated high mobility group box.
   
 
 0.548
LOC101155291
Signal-induced proliferation-associated 1.
    
 0.532
raf1
Raf-1 proto-oncogene, serine/threonine kinase a.
    
 0.525
araf
A-Raf proto-oncogene, serine/threonine kinase.
    
 0.525
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
 0.525
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 0.520
ENSORLP00000032656
Uncharacterized protein.
    
 0.518
H2M6E4_ORYLA
Uncharacterized protein.
    
 0.516
LOC101165932
Intersectin 2a.
    
 0.516
ENSORLP00000034742
Uncharacterized protein.
    
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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