STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zpld1Zona pellucida-like domain containing 1a. (413 aa)    
Predicted Functional Partners:
LOC101158493
Otolith matrix protein.
      
 0.521
LOC101160277
Dynein light chain roadblock.
   
    0.501
bricd5
BRICHOS domain containing 5.
      
 0.489
LOC101166797
Parvalbumin 8; Belongs to the parvalbumin family.
  
   
 0.470
LOC101165112
Anterior gradient 1.
      
 0.463
gb-2
Embryonic beta-type globin; Belongs to the globin family.
  
     0.414
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.