Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
H2LLD4_ORYLASynaptotagmin-like 2a. (540 aa)    
Predicted Functional Partners:
LOC101172416
Uncharacterized protein.
   
 0.792
rab27a
RAB27A, member RAS oncogene family.
   
 0.792
rab27b
RAB27B, member RAS oncogene family.
   
 0.792
tbc1d10a
TBC1 domain family, member 10Ab.
     
  0.529
tbc1d10b
TBC1 domain family, member 10b.
     
  0.529
LOC101158204
TBC1 domain family, member 10Aa.
     
  0.529
LOC101164402
Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.522
LOC101164734
t-SNARE coiled-coil homology domain-containing protein.
    
 0.476
stx2
Syntaxin 2b; Belongs to the syntaxin family.
    
 0.475
lhfpl2
LHFPL tetraspan subfamily member 2a.
     
 0.442
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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