Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169959Zgc:112083. (477 aa)    
Predicted Functional Partners:
LOC101166817
Nuclear protein, ataxia-telangiectasia locus.
    
 
 0.897
gsc
Goosecoid.
    
   0.767
dctn2
Dynactin 2 (p50).
      
 0.694
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.603
sdk1
Sidekick cell adhesion molecule 1a.
      
 0.600
LOC101169362
Sidekick cell adhesion molecule 2a.
      
 0.600
sdk2
Sidekick cell adhesion molecule 2b.
      
 0.600
LSM10
LSM10, U7 small nuclear RNA associated.
      
 0.598
LOC111946795
FEV transcription factor, ETS family member.
      
 0.535
LOC101158988
E2F transcription factor 7.
      
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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