mtrex protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

mtrex

Uncharacterized protein. (1036 aa)

Predicted Functional Partners:

LOC101159034

0.999

exosc10

0.998

zcchc8

0.998

zfc3h1

0.996

exosc7

0.995

exosc2

0.995

exosc4

0.995

exosc3

0.995

exosc5

0.994

srrt

0.993

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101159034	exosc10	ENSORLP00000042175	ENSORLP00000006455	RNA binding motif protein 7.	Exosome component 10.	0.987
LOC101159034	exosc2	ENSORLP00000042175	ENSORLP00000009329	RNA binding motif protein 7.	Exosome component 2.	0.991
LOC101159034	exosc3	ENSORLP00000042175	ENSORLP00000033018	RNA binding motif protein 7.	Exosome component 3.	0.993
LOC101159034	exosc4	ENSORLP00000042175	ENSORLP00000021636	RNA binding motif protein 7.	Exosome component 4.	0.968
LOC101159034	exosc5	ENSORLP00000042175	ENSORLP00000032010	RNA binding motif protein 7.	Exosome component 5.	0.979
LOC101159034	exosc7	ENSORLP00000042175	ENSORLP00000002795	RNA binding motif protein 7.	Exosome component 7.	0.988
LOC101159034	mtrex	ENSORLP00000042175	ENSORLP00000006853	RNA binding motif protein 7.	Uncharacterized protein.	0.999
LOC101159034	srrt	ENSORLP00000042175	ENSORLP00000010190	RNA binding motif protein 7.	Serrate RNA effector molecule homolog (Arabidopsis).	0.937
LOC101159034	zcchc8	ENSORLP00000042175	ENSORLP00000007533	RNA binding motif protein 7.	Zinc finger, CCHC domain containing 8.	0.999
LOC101159034	zfc3h1	ENSORLP00000042175	ENSORLP00000030951	RNA binding motif protein 7.	Uncharacterized protein.	0.732
exosc10	LOC101159034	ENSORLP00000006455	ENSORLP00000042175	Exosome component 10.	RNA binding motif protein 7.	0.987
exosc10	exosc2	ENSORLP00000006455	ENSORLP00000009329	Exosome component 10.	Exosome component 2.	0.999
exosc10	exosc3	ENSORLP00000006455	ENSORLP00000033018	Exosome component 10.	Exosome component 3.	0.999
exosc10	exosc4	ENSORLP00000006455	ENSORLP00000021636	Exosome component 10.	Exosome component 4.	0.999
exosc10	exosc5	ENSORLP00000006455	ENSORLP00000032010	Exosome component 10.	Exosome component 5.	0.999
exosc10	exosc7	ENSORLP00000006455	ENSORLP00000002795	Exosome component 10.	Exosome component 7.	0.999
exosc10	mtrex	ENSORLP00000006455	ENSORLP00000006853	Exosome component 10.	Uncharacterized protein.	0.998
exosc10	srrt	ENSORLP00000006455	ENSORLP00000010190	Exosome component 10.	Serrate RNA effector molecule homolog (Arabidopsis).	0.734
exosc10	zcchc8	ENSORLP00000006455	ENSORLP00000007533	Exosome component 10.	Zinc finger, CCHC domain containing 8.	0.913
exosc10	zfc3h1	ENSORLP00000006455	ENSORLP00000030951	Exosome component 10.	Uncharacterized protein.	0.765