STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrexUncharacterized protein. (1036 aa)    
Predicted Functional Partners:
exosc10
Exosome component 10.
   
 0.998
exosc9
Exosome component 9.
   
 0.997
exosc5
Exosome component 5.
   
 0.997
exosc2
Exosome component 2.
   
 0.996
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
 
 0.996
H2MCJ8_ORYLA
Programmed cell death 11.
   
 0.992
exosc7
Exosome component 7.
   
 0.987
exosc1
Exosome component 1.
   
 0.987
bysl
Bystin-like.
   
 
 0.985
utp4
UTP4 small subunit processome component.
   
 0.985
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.