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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl39Mitochondrial ribosomal protein L39. (337 aa)    
Predicted Functional Partners:
mrps31
Mitochondrial ribosomal protein S31.
   
 
 0.958
mrpl1
Mitochondrial ribosomal protein L1.
   
 
 0.953
mrpl22
Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.944
mrpl12
Mitochondrial ribosomal protein L12.
   
 
 0.931
mrpl30
Mitochondrial ribosomal protein L30.
   
 
 0.930
mrpl16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 0.929
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.928
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.925
mrpl58
Mitochondrial ribosomal protein L58.
  
 
 0.923
MRPL21
Mitochondrial ribosomal protein L21.
  
 
 0.921
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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