STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161005WH1 domain-containing protein. (384 aa)    
Predicted Functional Partners:
grm1
Glutamate receptor, metabotropic 1a.
    
 0.965
HOMER1
Homer scaffold protein 1.
    
0.868
LOC101163175
Homer scaffold protein 1b.
    
0.868
LOC101173805
Glutamate receptor, metabotropic 5a.
    
 0.671
grm5
Glutamate receptor, metabotropic 5b.
    
 0.671
LOC101171794
Uncharacterized protein.
      
 0.665
thoc2
THO complex 2.
      
 0.560
LOC101167744
Uncharacterized protein.
    
 0.513
LOC101172375
Uncharacterized protein.
    
 0.513
shank3
SH3 and multiple ankyrin repeat domains 3a.
    
 0.513
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.