LOC101173462 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101173462

Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1826 aa)

Predicted Functional Partners:

RAB11A

0.768

rsl24d1

0.622

LOC101159906

0.611

LOC101160399

0.611

LOC101156358

0.611

LOC101171030

0.611

cfap53

0.603

lmbrd2

0.581

ap4e1

0.565

hmg20b

0.564

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156358	LOC101173462	ENSORLP00000035081	ENSORLP00000006863	Uncharacterized protein.	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.611
LOC101159906	LOC101160399	ENSORLP00000019145	ENSORLP00000019170	RAB11B, member RAS oncogene family, b.	RAB11B, member RAS oncogene family, a.	0.900
LOC101159906	LOC101171030	ENSORLP00000019145	ENSORLP00000042567	RAB11B, member RAS oncogene family, b.	RAB11a, member RAS oncogene family, like.	0.901
LOC101159906	LOC101173462	ENSORLP00000019145	ENSORLP00000006863	RAB11B, member RAS oncogene family, b.	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.611
LOC101160399	LOC101159906	ENSORLP00000019170	ENSORLP00000019145	RAB11B, member RAS oncogene family, a.	RAB11B, member RAS oncogene family, b.	0.900
LOC101160399	LOC101171030	ENSORLP00000019170	ENSORLP00000042567	RAB11B, member RAS oncogene family, a.	RAB11a, member RAS oncogene family, like.	0.901
LOC101160399	LOC101173462	ENSORLP00000019170	ENSORLP00000006863	RAB11B, member RAS oncogene family, a.	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.611
LOC101171030	LOC101159906	ENSORLP00000042567	ENSORLP00000019145	RAB11a, member RAS oncogene family, like.	RAB11B, member RAS oncogene family, b.	0.901
LOC101171030	LOC101160399	ENSORLP00000042567	ENSORLP00000019170	RAB11a, member RAS oncogene family, like.	RAB11B, member RAS oncogene family, a.	0.901
LOC101171030	LOC101173462	ENSORLP00000042567	ENSORLP00000006863	RAB11a, member RAS oncogene family, like.	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.611
LOC101173462	LOC101156358	ENSORLP00000006863	ENSORLP00000035081	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.611
LOC101173462	LOC101159906	ENSORLP00000006863	ENSORLP00000019145	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	RAB11B, member RAS oncogene family, b.	0.611
LOC101173462	LOC101160399	ENSORLP00000006863	ENSORLP00000019170	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	RAB11B, member RAS oncogene family, a.	0.611
LOC101173462	LOC101171030	ENSORLP00000006863	ENSORLP00000042567	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	RAB11a, member RAS oncogene family, like.	0.611
LOC101173462	RAB11A	ENSORLP00000006863	ENSORLP00000019148	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	RAB11A, member RAS oncogene family.	0.768
LOC101173462	ap4e1	ENSORLP00000006863	ENSORLP00000007009	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.565
LOC101173462	cfap53	ENSORLP00000006863	ENSORLP00000035892	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.603
LOC101173462	hmg20b	ENSORLP00000006863	ENSORLP00000005838	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	High mobility group 20B.	0.564
LOC101173462	lmbrd2	ENSORLP00000006863	ENSORLP00000043722	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	LMBR1 domain containing 2b.	0.581
LOC101173462	rsl24d1	ENSORLP00000006863	ENSORLP00000006777	Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Ribosomal L24 domain containing 1.	0.622