STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raver1Ribonucleoprotein, PTB-binding 1. (726 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
   0.707
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.550
aicda
Activation-induced cytidine deaminase.
  
 
 0.549
dmap1
DNA methyltransferase 1 associated protein 1.
      
 0.541
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.537
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.537
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.527
rps6
Ribosomal protein S6.
   
 
 0.526
ybx2
CSD_1 domain-containing protein.
    
 0.524
H2LM32_ORYLA
Angiopoietin-like 6.
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.