STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raver1Ribonucleoprotein, PTB-binding 1. (726 aa)    
Predicted Functional Partners:
eprs1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.694
KPNA2
Importin subunit alpha; Belongs to the importin alpha family.
      
 0.618
prpf4b
Pre-mRNA processing factor 4Bb.
   
  
 0.604
ptbp1b
Uncharacterized protein.
   
 0.587
PTBP2
Polypyrimidine tract binding protein 2a.
   
 0.587
ptbp2
Polypyrimidine tract binding protein 2.
   
 0.587
ptbp1
Polypyrimidine tract binding protein 1a.
   
 0.587
ybx2
CSD_1 domain-containing protein.
    
 0.585
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.578
dmap1
DNA methyltransferase 1 associated protein 1.
      
 0.578
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]