STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myo5cMyosin VC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1609 aa)    
Predicted Functional Partners:
RAB11A
RAB11A, member RAS oncogene family.
   
 0.752
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.618
LOC101159906
RAB11B, member RAS oncogene family, b.
   
 0.611
LOC101160399
RAB11B, member RAS oncogene family, a.
   
 0.611
LOC101156358
Uncharacterized protein.
   
 0.611
LOC101171030
RAB11a, member RAS oncogene family, like.
   
 0.611
cfap53
Uncharacterized protein.
   
 0.599
lmbrd2
LMBR1 domain containing 2b.
      
 0.576
hmg20b
High mobility group 20B.
   
  
 0.560
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
    
 
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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