STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pibf1Progesterone immunomodulatory binding factor 1. (749 aa)    
Predicted Functional Partners:
bora
Bora aurora kinase A activator.
   
 0.631
fopnl
Fgfr1op N-terminal like.
   
 
 0.593
mzt1
Mitotic spindle organizing protein 1.
    
 
 0.592
txndc12
Thioredoxin domain containing 12 (endoplasmic reticulum).
    
 0.584
tbc1d31
TBC1 domain family, member 31.
    
 
 0.575
Ttll5
Uncharacterized protein.
    
 
 0.562
madd
MAP-kinase activating death domain.
      
 0.559
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.558
akna
Uncharacterized protein.
      
 0.558
ENSORLP00000039947
Ig-like domain-containing protein.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.