STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slu7SLU7 homolog, splicing factor. (581 aa)    
Predicted Functional Partners:
prpf18
PRP18 pre-mRNA processing factor 18 homolog (yeast).
  
 0.999
ppil3
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.998
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.997
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.997
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.997
fam32a
Family with sequence similarity 32 member A.
   
 0.997
syf2
SYF2 pre-mRNA-splicing factor.
   
 0.996
cactin
Cactin.
    
 0.990
NKAPL
NFKB activating protein like.
   
 0.989
c9h9orf78
Zgc:103692.
   
 0.988
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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