STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172196Zgc:101765. (289 aa)    
Predicted Functional Partners:
mmadhc
Zgc:92335.
    
 0.809
mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase.
     
 0.782
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 0.781
gclc
Glutamate-cysteine ligase, catalytic subunit.
   
 0.677
mmab
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
     
 0.505
mmaa
Metabolism of cobalamin associated A.
   
  
 0.499
lmbrd1
LMBR1 domain containing 1.
      
 0.489
mmut
Methylmalonyl CoA mutase.
      
 0.487
cops2
COP9 signalosome subunit 2.
 
 
    0.454
mcee
Methylmalonyl CoA epimerase.
   
 
 0.437
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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