Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pef1Penta-EF-hand domain containing 1. (263 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6 interacting protein.
    
 
 0.876
sec31a
SEC31 homolog A, COPII coat complex component.
    
 
 0.875
LOC101160851
SEC31 homolog B, COPII coat complex component.
    
 
 0.869
TINAGL1
Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family.
      
 0.832
fam83b
Family with sequence similarity 83 member B.
      
 0.827
KLHL12
BTB domain-containing protein.
    
 
 0.806
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.724
LOC101166028
Zgc:123278.
   
 
 0.669
tsg101
Tumor susceptibility 101a.
   
 
 0.669
hebp3
Heme-binding protein 3.
    
   0.667
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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