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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pef1Penta-EF-hand domain containing 1. (263 aa)    
Predicted Functional Partners:
sec31a
SEC31 homolog A, COPII coat complex component.
    
 
 0.847
LOC101160851
SEC31 homolog B, COPII coat complex component.
    
 
 0.847
TINAGL1
Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family.
      
 0.831
fam83b
Family with sequence similarity 83 member B.
      
 0.821
pdcd6ip
Programmed cell death 6 interacting protein.
    
 
 0.782
CUL3
Cullin 3; Belongs to the cullin family.
    
 
 0.741
KLHL12
BTB domain-containing protein.
    
 
 0.685
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.632
cast
Uncharacterized protein.
   
 0.621
hebp3
Heme-binding protein 3.
    
   0.579
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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