STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160669Nuclear receptor binding SET domain protein 1a. (2086 aa)    
Predicted Functional Partners:
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
    
 0.683
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
    
 0.683
Plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
    
 0.683
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.678
eed
Embryonic ectoderm development protein.
   
 0.663
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.617
bard1
BRCA1 associated RING domain 1.
   
 0.582
rbbp5
Retinoblastoma binding protein 5.
    
 0.577
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.577
rad50
RAD50 homolog, double strand break repair protein.
   
 0.570
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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