Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IQCA1LIQ motif containing with AAA domain 1. (813 aa)    
Predicted Functional Partners:
cfap43
Cilia and flagella associated protein 43.
   
 
 0.908
cfap58
Cilia and flagella associated protein 58.
   
 
 0.873
LOC101155347
RIB43A domain with coiled-coils 2.
   
 0.873
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.849
efhc1
EF-hand domain (C-terminal) containing 1.
  
 
 0.848
LOC101174411
Cytochrome b5 domain containing 1; Belongs to the cytochrome b5 family.
  
 
 
 0.843
cfap52
Cilia and flagella associated protein 52.
   
 0.813
ubxn7
UBX domain protein 7.
   
 0.813
ist1
IST1 factor associated with ESCRT-III.
    
 0.806
armc4
Armadillo repeat containing 4.
   
 
 0.792
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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