Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr19WD repeat domain 19. (1347 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
   
 0.999
ttc21b
Tetratricopeptide repeat domain 21B.
   
 0.999
wdr35
WD repeat-containing protein 35.
  
 0.999
IFT43
Uncharacterized protein.
    
 0.999
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
   
0.999
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
  
 0.976
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.973
cluap1
Clusterin associated protein 1.
  
 
 0.967
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.966
ift172
Intraflagellar transport 172.
   
 0.966
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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