STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rad21Uncharacterized protein. (636 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.999
smc1a
Structural maintenance of chromosomes protein.
   
 0.996
espl1
Extra spindle pole bodies like 1, separase.
   
 0.994
smc1b
Structural maintenance of chromosomes protein.
   
 0.980
pds5a
PDS5 cohesin associated factor A.
   
 0.972
LOC100301585
Stromal antigen 2b.
   
 0.964
H2M569_ORYLA
SCD domain-containing protein.
   
 0.964
stag1
Stromal antigen 1a.
   
 0.964
LOC101173396
SCD domain-containing protein.
   
 0.964
LOC101158626
Stromal antigen 2a.
   
 0.964
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.