STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LLS1_ORYLASi:ch211-66e2.5. (282 aa)    
Predicted Functional Partners:
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
   
 0.545
mst1r
Macrophage stimulating 1 receptor b.
  
 
 0.540
LOC101175036
Zgc:113337.
  
     0.497
LOC101163852
Bloodthirsty-related gene family, member 12.
  
 
  0.457
LOC101170271
Nerve growth factor receptor a (TNFR superfamily, member 16).
   
 0.447
LOC101164147
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
    
 0.443
LOC101157368
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 0.443
LOC101172833
Tumor necrosis factor receptor superfamily, member a.
  
 
  0.426
cnp-1
C-type natriuretic peptide 1; Exhibits natriuretic and vasodepressant activity. Has cGMP- stimulating activity. May help to regulate body fluid homeostasis in a variety of aquatic environments.
  
     0.402
ENSORLP00000033140
Apolipoprotein L, 1.
  
 
  0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.