STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172600Baculoviral IAP repeat containing 2. (707 aa)    
Predicted Functional Partners:
tradd
Tnfrsf1a-associated via death domain.
   
 0.990
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.984
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
 0.984
LOC101159282
Diablo, IAP-binding mitochondrial protein a.
    
 0.979
casp7
Caspase 7, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
 0.979
diablo
Diablo, IAP-binding mitochondrial protein a.
    
 0.979
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.973
LOC101166883
X-linked inhibitor of apoptosis.
    
0.972
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.971
LOC100049265
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.969
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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