STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1r16bProtein phosphatase 1, regulatory subunit 16B. (549 aa)    
Predicted Functional Partners:
LOC101158483
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.825
LOC101155811
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.825
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
    
 0.763
LOC101169945
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.753
LOC101171445
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.753
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.753
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
   0.628
LOC101154969
Protein phosphatase 1, regulatory (inhibitor) subunit 14Aa.
    
 0.570
mfsd12
Major facilitator superfamily domain containing 12a.
      
 0.551
ralgapb
Ral GTPase activating protein, beta subunit (non-catalytic).
      
 0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.