STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167144IKAROS family zinc finger 5. (418 aa)    
Predicted Functional Partners:
tada2a
Transcriptional adapter.
    
   0.643
PRTG
Protogenin.
     
 0.623
yeats2
YEATS domain containing 2.
    
 
 0.621
abl2
Tyrosine-protein kinase.
    
 0.612
dnpep
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
      
 0.600
LOC101168864
P53-induced death domain protein 1.
    
 0.510
kat2a
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
    
 0.509
LOC101159205
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
    
 0.509
ipo11
Importin 11.
    
 
 0.504
ythdc1
YTH domain containing 1.
      
 0.492
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.