STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167144IKAROS family zinc finger 5. (418 aa)    
Predicted Functional Partners:
PRTG
Protogenin.
     
 0.573
abl2
Tyrosine-protein kinase.
    
 0.541
dnpep
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
      
 0.518
ythdc1
YTH domain containing 1.
      
 0.501
LOC101163439
PHD finger protein 1.
     
 0.472
lin28b
Lin-28 homolog B (C. elegans).
    
 
 0.460
yeats2
YEATS domain containing 2.
    
 
 0.420
ipo11
Importin 11.
    
 
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.