Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TMEM47Transmembrane protein 47. (181 aa)    
Predicted Functional Partners:
LOC101163154
Doublesex and mab-3 related transcription factor 2a.
      
 0.842
armh1
Armadillo like helical domain containing 1.
      
 0.825
LOC101168449
Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.
      
 0.725
nexn
Ig-like domain-containing protein.
      
 0.711
kbtbd2
Kelch repeat and BTB (POZ) domain containing 2.
      
 0.708
LOC101173294
Abhydrolase domain containing 17A.
      
 0.695
LOC101156565
Doublesex and mab-3 related transcription factor 2b.
      
 0.688
fbrsl1
Fibrosin-like 1.
      
 0.688
ipo13
Importin 13.
      
 0.684
fbxo21
F-box protein 21.
      
 0.682
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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