Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rereArginine-glutamic acid dipeptide (RE) repeats a. (1537 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 
 0.775
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 0.668
LOC101164305
Nuclear receptor subfamily 2, group E, member 3.
    
 0.668
nr2e1
Nuclear receptor subfamily 2 group E member 1; Orphan receptor that binds DNA as a monomer to hormone response elements (HRE) containing an extended core motif half-site sequence 5'-AAGGTCA-3' in which the 5' flanking nucleotides participate in determining receptor specificity. May be involved in the regulation of early eye development.
    
 0.668
LOC101157353
NR LBD domain-containing protein.
    
 0.668
wdr5
WD repeat domain 5.
    
   0.622
fat2
FAT atypical cadherin 2.
    
 0.607
fat1
FAT atypical cadherin 1a.
    
 0.597
H2LIE7_ORYLA
Uncharacterized protein.
    
 0.542
fat3
FAT atypical cadherin 3a.
    
 0.542
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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