STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171449ATP-binding cassette, sub-family A (ABC1), member 4a. (2193 aa)    
Predicted Functional Partners:
S1PR3
Sphingosine-1-phosphate receptor 3; Belongs to the G-protein coupled receptor 1 family.
      
 0.813
palm
Paralemmin 1b.
      
 0.811
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.634
LOC101161189
Uncharacterized protein.
   
 0.551
LOC101161439
Uncharacterized protein.
   
 0.551
LOC101169721
Apolipoprotein A-Ib.
    
 0.489
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
    
 0.470
LOC101165997
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.429
abcd3
ATP-binding cassette, sub-family D (ALD), member 3a.
      
 0.407
zdhhc8
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
 
  0.403
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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