STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAD23BRAD23 homolog B, nucleotide excision repair protein. (472 aa)    
Predicted Functional Partners:
ngly1
N-glycanase 1.
    
 0.966
xpc
Xeroderma pigmentosum, complementation group C.
   
 0.965
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
   
 0.954
xpa
Xeroderma pigmentosum, complementation group A.
    
 0.946
LOC101161932
Ataxin 3.
    
 0.945
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
  
  
 
0.922
LOC101170769
Centrin, EF-hand protein, 2.
   
 0.919
ddb2
Damage-specific DNA binding protein 2.
   
 0.918
cop1
COP1 E3 ubiquitin ligase.
     
 0.915
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.914
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.