STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPC6-2ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family. (794 aa)    
Predicted Functional Partners:
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.733
trpv4
Transient receptor potential cation channel, subfamily V, member 4; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.641
trpv1
Transient receptor potential cation channel, subfamily V, member 1; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.602
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
  
 
0.552
LOC100533512
Transient receptor potential cation channel, subfamily M, member 3.
    
 0.506
LOC101173916
Mothers against decapentaplegic homolog.
   
 0.503
LOC101163504
Mothers against decapentaplegic homolog.
   
 0.484
trpm2
Transient receptor potential cation channel, subfamily M, member 2.
    
0.435
LOC101156837
Stromal interaction molecule 1a.
    
 0.425
LOC101166934
SAM domain-containing protein.
    
 0.425
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.