STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168821Translational activator of mitochondrially encoded cytochrome c oxidase I. (294 aa)    
Predicted Functional Partners:
dars2
Aspartyl-tRNA synthetase 2, mitochondrial.
  
  
 0.814
lrpprc
Leucine-rich pentatricopeptide repeat containing.
      
 0.800
tsfm
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.724
fastkd1
FAST kinase domains 1.
      
 0.668
mrpl32
Mitochondrial ribosomal protein L32.
  
  
 0.666
chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
      
 0.666
LOC105356914
Obg-like ATPase 1.
  
  
 0.649
OLA1
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
  
  
 0.649
yars1
Tyrosine--tRNA ligase.
  
 
 0.645
mtif3
Mitochondrial translational initiation factor 3.
      
 0.642
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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