STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156310Calcium binding protein 39-like. (334 aa)    
Predicted Functional Partners:
stk11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
    
 0.981
prkaa2
Non-specific serine/threonine protein kinase.
    
 0.961
prkaa1
Non-specific serine/threonine protein kinase.
    
 0.961
strada
STE20 related adaptor alpha.
    
 0.956
STRADB
STE20 related adaptor beta.
    
 0.956
LOC101163094
Calcium binding protein 39, like 1.
  
  
 
0.901
LOC101165166
Calcium binding protein 39.
  
  
 
0.900
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
    
 
 0.772
stk25
Serine/threonine kinase 25b.
   
 
 0.603
stk24
Serine/threonine kinase 24b (STE20 homolog, yeast).
   
 
 0.603
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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