Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
col11a1Collagen, type XI, alpha 1a. (1773 aa)    
Predicted Functional Partners:
tiprl
TIP41, TOR signaling pathway regulator-like (S. cerevisiae).
    
 
 0.511
vars2
Valyl-tRNA synthetase 2, mitochondrial (putative); Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.504
LOC101159701
Peptidylprolyl isomerase.
    
 
 0.504
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
    
 0.498
H2MFT6_ORYLA
Uncharacterized protein.
    
   0.488
serpinf1
SERPIN domain-containing protein; Belongs to the serpin family.
   
 0.470
LOC100125512
Metalloendopeptidase.
    
 0.458
thbs2
Thrombospondin 2a.
    
 0.454
nlgn3b
Neuroligin 3b.
    
 
 0.452
nlgn1
Neuroligin 1.
    
 
 0.434
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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