STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdadc1Cytidine and dCMP deaminase domain containing 1. (512 aa)    
Predicted Functional Partners:
morn5
MORN repeat containing 5.
      
 0.912
nhlrc2
NHL repeat containing 2.
      
 0.808
tyms
Thymidylate synthetase.
  
 
 0.783
ccdc25
Coiled-coil domain containing 25.
      
 0.782
tk1
Thymidine kinase.
  
 
 0.779
llph
LLP homolog, long-term synaptic facilitation factor.
      
 0.752
itm2b
Integral membrane protein 2Bb.
      
 0.694
SCAF8
SR-related CTD associated factor 8.
      
 0.680
TYMP
Thymidine phosphorylase; Catalyzes the reversible phosphorolysis of thymidine. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.
    
 0.674
rbbp6
RING-type domain-containing protein.
      
 0.673
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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