Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101165789Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (589 aa)    
Predicted Functional Partners:
LOC101160447
RAN binding protein 2.
   
 0.639
nudcd1
NudC domain containing 1.
    
   0.602
nudcd2
NudC domain containing 2.
    
  0.600
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.561
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.561
LOC101173159
Motilin receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.532
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.503
rae1
Ribonucleic acid export 1.
    
 0.485
atoh7
Atonal bHLH transcription factor 7.
    
 
 0.479
rfc5
Replication factor C (activator 1) 5.
   
  0.476
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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