Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bud13BUD13 homolog. (539 aa)    
Predicted Functional Partners:
Rbmx2
Uncharacterized protein.
   
 0.998
SNIP1
Smad nuclear interacting protein 1.
   
 0.995
gpkow
G patch domain and KOW motifs.
   
 
 0.989
mfap1
Microfibril associated protein 1.
   
 
 0.959
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.954
bud31
BUD31 homolog.
    
 
 0.929
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.923
cwc22
CWC22 spliceosome associated protein homolog.
   
 
 0.921
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.920
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.917
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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