Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LM76_ORYLAFin bud initiation factor a. (209 aa)    
Predicted Functional Partners:
fmod
Fibromodulin a.
   
    0.981
LOC101167616
Usher syndrome 1C.
      
 0.787
LOC101163972
Upper zone of growth plate and cartilage matrix associated b.
      
 0.767
LOC101173626
Copine VIII.
      
 0.730
CPNE8
Copine 8.
      
 0.730
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.697
LOC105358663
Anoctamin.
      
 0.694
LOC101170482
Anoctamin.
      
 0.694
ENSORLP00000044836
Anoctamin.
      
 0.694
pgbd5
PiggyBac transposable element derived 5.
      
 0.691
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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