STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LM76_ORYLAFin bud initiation factor a. (209 aa)    
Predicted Functional Partners:
LOC101163972
Upper zone of growth plate and cartilage matrix associated b.
      
 0.727
LOC101167616
Usher syndrome 1C.
      
 0.726
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.669
LOC105358663
Anoctamin.
      
 0.664
LOC101170482
Anoctamin.
      
 0.664
ENSORLP00000044836
Anoctamin.
      
 0.664
znf536
Zinc finger protein 536.
      
 0.661
LOC101171234
Plakophilin 3b.
      
 0.632
LOC101173626
Copine VIII.
      
 0.626
CPNE8
Copine 8.
      
 0.626
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.