STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spg7SPG7 matrix AAA peptidase subunit, paraplegin. (807 aa)    
Predicted Functional Partners:
afg3l2
AFG3-like AAA ATPase 2.
  
 
0.967
LOC101159734
AAA domain-containing protein.
  
 
0.964
LOC101157690
Si:ch1073-174d20.2.
  
 
0.963
phb2
Prohibitin.
   
 0.936
phb
Prohibitin.
   
 0.926
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
  
  
 0.869
ENSORLP00000033705
Spatacsin_C domain-containing protein.
      
 0.862
mrpl1
Mitochondrial ribosomal protein L1.
   
 
 0.794
LOC101170791
YME1-like 1b.
   
 0.793
yme1l1
YME1-like 1a.
   
 0.793
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.