Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnpc3RNA-binding region (RNP1, RRM) containing 3. (500 aa)    
Predicted Functional Partners:
zmat5
Zinc finger, matrin-type 5.
   
 0.999
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
    
 0.999
sf3b1
Splicing factor 3b, subunit 1.
   
 0.994
snrpg
Small nuclear ribonucleoprotein G.
   
 0.993
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 0.991
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 0.990
sf3b2
Splicing factor 3b, subunit 2.
   
 0.987
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
    
 0.986
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.978
snrnp25
Small nuclear ribonucleoprotein 25.
     
 0.977
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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