rnpc3 protein (Oryzias latipes) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

rnpc3

RNA-binding region (RNP1, RRM) containing 3. (500 aa)

Predicted Functional Partners:

zmat5

0.975

snrpd3

0.973

snrpg

0.972

sf3b1

0.966

sf3b2

0.959

snrpd1

0.956

sf3b6

0.954

phf5a

0.953

snrpe

0.945

zcrb1

0.942

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
phf5a	rnpc3	ENSORLP00000003227	ENSORLP00000007159	PHD finger protein 5A.	RNA-binding region (RNP1, RRM) containing 3.	0.953
phf5a	sf3b1	ENSORLP00000003227	ENSORLP00000025076	PHD finger protein 5A.	Splicing factor 3b, subunit 1.	0.999
phf5a	sf3b2	ENSORLP00000003227	ENSORLP00000010339	PHD finger protein 5A.	Splicing factor 3b, subunit 2.	0.999
phf5a	sf3b6	ENSORLP00000003227	ENSORLP00000019969	PHD finger protein 5A.	Splicing factor 3b, subunit 6.	0.999
phf5a	snrpd1	ENSORLP00000003227	ENSORLP00000015671	PHD finger protein 5A.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.986
phf5a	snrpd3	ENSORLP00000003227	ENSORLP00000030977	PHD finger protein 5A.	Small nuclear ribonucleoprotein Sm D3.	0.986
phf5a	snrpe	ENSORLP00000003227	ENSORLP00000029192	PHD finger protein 5A.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.997
phf5a	snrpg	ENSORLP00000003227	ENSORLP00000030086	PHD finger protein 5A.	Small nuclear ribonucleoprotein G.	0.998
phf5a	zcrb1	ENSORLP00000003227	ENSORLP00000016406	PHD finger protein 5A.	Zinc finger CCHC-type and RNA binding motif 1.	0.723
phf5a	zmat5	ENSORLP00000003227	ENSORLP00000010208	PHD finger protein 5A.	Zinc finger, matrin-type 5.	0.941
rnpc3	phf5a	ENSORLP00000007159	ENSORLP00000003227	RNA-binding region (RNP1, RRM) containing 3.	PHD finger protein 5A.	0.953
rnpc3	sf3b1	ENSORLP00000007159	ENSORLP00000025076	RNA-binding region (RNP1, RRM) containing 3.	Splicing factor 3b, subunit 1.	0.966
rnpc3	sf3b2	ENSORLP00000007159	ENSORLP00000010339	RNA-binding region (RNP1, RRM) containing 3.	Splicing factor 3b, subunit 2.	0.959
rnpc3	sf3b6	ENSORLP00000007159	ENSORLP00000019969	RNA-binding region (RNP1, RRM) containing 3.	Splicing factor 3b, subunit 6.	0.954
rnpc3	snrpd1	ENSORLP00000007159	ENSORLP00000015671	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.956
rnpc3	snrpd3	ENSORLP00000007159	ENSORLP00000030977	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein Sm D3.	0.973
rnpc3	snrpe	ENSORLP00000007159	ENSORLP00000029192	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.945
rnpc3	snrpg	ENSORLP00000007159	ENSORLP00000030086	RNA-binding region (RNP1, RRM) containing 3.	Small nuclear ribonucleoprotein G.	0.972
rnpc3	zcrb1	ENSORLP00000007159	ENSORLP00000016406	RNA-binding region (RNP1, RRM) containing 3.	Zinc finger CCHC-type and RNA binding motif 1.	0.942
rnpc3	zmat5	ENSORLP00000007159	ENSORLP00000010208	RNA-binding region (RNP1, RRM) containing 3.	Zinc finger, matrin-type 5.	0.975