Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111948921SOGA family member 3a. (795 aa)    
Predicted Functional Partners:
nrbf2
Nuclear receptor binding factor 2b.
    
   0.622
LOC101173088
Cytochrome b5 reductase 4.
      
 0.582
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.556
LOC111948921-2
DUF4482 domain-containing protein.
 
 
  
 0.527
Snap91
ENTH domain-containing protein.
   
  
 0.517
ptprk
Protein tyrosine phosphatase receptor type K.
   
  
 0.513
ECHDC1
Ethylmalonyl-CoA decarboxylase 1; Belongs to the enoyl-CoA hydratase/isomerase family.
      
 0.508
ccdc177
Uncharacterized protein.
      
 0.498
rbm33
RNA binding motif protein 33a.
      
 0.498
trip13
Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family.
    
 
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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