STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169556ADAM metallopeptidase domain 12. (955 aa)    
Predicted Functional Partners:
VASH1
Vasohibin 1.
      
 0.618
WDR1
WD repeat domain 1.
      
 0.501
LOC101169310
DEAH (Asp-Glu-Ala-His) box polypeptide 32b.
     
 0.499
LOC101162765
EBF transcription factor 1.
      
 0.498
map2k5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
      
 0.492
cilp2
Cartilage intermediate layer protein 2.
      
 0.485
SLC2A9
Solute carrier family 2 member 9; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
     
 0.479
idh3b
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
      
 0.453
LOC101170425
Hyaluronidase.
   
 
 0.450
HYAL2
Hyaluronidase.
   
 
 0.450
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.