STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEMA4DSemaphorin 4D; Belongs to the semaphorin family. (903 aa)    
Predicted Functional Partners:
LOC101159664
Plexin b1b.
    
 0.868
LOC101162124
Plexin b1a.
    
0.771
bysl
Bystin-like.
      
 0.737
sspn
Sarcospan (Kras oncogene-associated gene).
      
 0.719
ptprc
Protein tyrosine phosphatase receptor type C.
    
 0.698
LOC101169201
Plexin b2b.
    
 0.692
H2MR98_ORYLA
Plexin_cytopl domain-containing protein.
    
 0.692
LOC101165957
Plexin B3.
    
 0.692
YES1
Tyrosine-protein kinase.
    
 0.649
LOC101175393
Macrophage stimulating 1 receptor a.
    
 0.643
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.