Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA4DSemaphorin 4D; Belongs to the semaphorin family. (903 aa)    
Predicted Functional Partners:
LOC101159664
Plexin b1b.
    
 0.891
ptprc
Protein tyrosine phosphatase receptor type C.
    
 0.813
LOC101162124
Plexin b1a.
    
0.785
bysl
Bystin-like.
      
 0.737
sspn
Sarcospan (Kras oncogene-associated gene).
      
 0.725
plxnc1
Plexin C1.
    
 0.725
LOC101169201
Plexin b2b.
    
 0.710
H2MR98_ORYLA
Plexin_cytopl domain-containing protein.
    
 0.710
LOC101165957
Plexin B3.
    
 0.698
LOC101174431
RAS related.
    
 0.657
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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