STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rspo3R-spondin-3. (328 aa)    
Predicted Functional Partners:
znrf3
Zinc and ring finger 3.
    
 0.995
lgr4
Leucine-rich repeat containing G protein-coupled receptor 4.
   
 0.994
lgr5
G_PROTEIN_RECEP_F1_2 domain-containing protein.
   
 0.991
rnf43
Ring finger protein 43.
    
 0.979
rspo1
Uncharacterized protein.
  
 
0.962
rspo2
R-spondin-2.
  
  
0.956
lgr6
Leucine-rich repeat-containing G protein-coupled receptor 6.
    
 0.937
foxl1
Forkhead box L1.
     
 0.692
rps27a
Ribosomal protein S27a.
     
  0.599
AOPEP
Aminopeptidase O (putative).
  
 
 0.562
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.